Curated BLAST for Genomes

 

Curated BLAST

Searching in Enterococcus termitis LMG 8895 (GCF_001730305.1)

Found 11 curated entries in PaperBLAST's database that match '4.1.1.48' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Enterococcus termitis LMG 8895, or try another query

trpC BCR25_RS07715 BCR25_03335 WP_069663042.1: indole-3-glycerol phosphate synthase TrpC
is similar to:
PaperBLAST

P84126: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Thermus thermophilus

39% id,
95% cov

trpC / Q9YGB5: indole-3-glycerol phosphate synthase (EC 4.1.1.48) from Thermococcus kodakarensis
Q9YGB5: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Thermococcus kodakarensis

36% id,
96% cov

trpC / Q56319: indole-3-glycerol phosphate synthase (EC 4.1.1.48) from Thermotoga maritima

33% id,
99% cov

More...

BCR25_RS07725 BCR25_03345 WP_069663044.1: aminodeoxychorismate/anthranilate synthase component II
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

38% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory