Curated BLAST for Genomes

 

Curated BLAST

Searching in Enterococcus termitis LMG 8895 (GCF_001730305.1)

Found 33 curated entries in PaperBLAST's database that match '4.3.1.19' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Enterococcus termitis LMG 8895, or try another query

ilvA BCR25_RS11385 BCR25_05920 WP_069663723.1: threonine ammonia-lyase IlvA
is similar to:
PaperBLAST

CA265_RS15860: threonine deaminase (EC 4.3.1.19) from Pedobacter sp.

53% id,
98% cov

A0QX60: threonine ammonia-lyase (EC 4.3.1.19) from Mycolicibacterium smegmatis

46% id,
93% cov

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

47% id,
91% cov

More...

thrC BCR25_RS17880 BCR25_11995 WP_069664978.1: threonine synthase
is similar to:
PaperBLAST

SDSL_RAT / A0A6N3IN21: Serine dehydratase-like; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Rattus norvegicus

27% id,
95% cov

SDSL_MOUSE / Q8R238: Serine dehydratase-like; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; SDH; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Mus musculus

26% id,
91% cov

SDSL_HUMAN / Q96GA7: Serine dehydratase-like; Cancerous serine dehydratase; cSDH; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; SDHL; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens
SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens

26% id,
91% cov

More...

trpB BCR25_RS07705 BCR25_03325 WP_069663040.1: tryptophan synthase subunit beta
is similar to:
PaperBLAST

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

25% id,
70% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens

31% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

215022-216344 (frame +3) on NZ_MIJY01000023.1 Enterococcus termitis strain LMG 8895 3, whole genome shotgun sequence
is similar to:
PaperBLAST

CA265_RS15860: threonine deaminase (EC 4.3.1.19) from Pedobacter sp.
Also see hits to annotated proteins above

52% id,
100% cov

ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli
Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli
ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli
P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli
Also see hits to annotated proteins above

33% id,
78% cov

V6QU65: threonine ammonia-lyase (EC 4.3.1.19) from Fusarium graminearum
Also see hits to annotated proteins above

34% id,
72% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory