Curated BLAST for Genomes

 

Curated BLAST

Searching in Enterococcus termitis LMG 8895 (GCF_001730305.1)

Found 18 curated entries in PaperBLAST's database that match '5.3.1.24' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Enterococcus termitis LMG 8895, or try another query

hisA BCR25_RS00400 BCR25_00400 WP_069661633.1: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
is similar to:
PaperBLAST

HIS4_STRCO / P16250: Phosphoribosyl isomerase A; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; N-(5'-phosphoribosyl)anthranilate isomerase; PRAI; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16; EC 5.3.1.24 from Streptomyces coelicolor
P16250: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Streptomyces coelicolor

39% id,
99% cov

BCR25_RS07710 BCR25_03330 WP_069663041.1: phosphoribosylanthranilate isomerase
is similar to:
PaperBLAST

trpF / Q56320: phosphoribosylanthranilate isomerase subunit (EC 5.3.1.24) from Thermotoga maritima

38% id,
99% cov

Q8U092: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Pyrococcus furiosus

35% id,
99% cov

trpF / B0B7P4: phosphoribosylanthranilate isomerase (EC 5.3.1.24; EC 4.2.1.160) from Chlamydia trachomatis
B0B7P4: 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one isomerase/dehydratase (EC 4.2.1.160); phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Chlamydia trachomatis

34% id,
97% cov

More...

hisF BCR25_RS00405 BCR25_00405 WP_069661634.1: imidazole glycerol phosphate synthase subunit HisF
is similar to:
PaperBLAST

HIS4_STRCO / P16250: Phosphoribosyl isomerase A; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; N-(5'-phosphoribosyl)anthranilate isomerase; PRAI; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16; EC 5.3.1.24 from Streptomyces coelicolor
P16250: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Streptomyces coelicolor

30% id,
85% cov

trpC BCR25_RS07715 BCR25_03335 WP_069663042.1: indole-3-glycerol phosphate synthase TrpC
is similar to:
PaperBLAST

TrpC / b1262: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli
trpC / P00909: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli
P00909: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Escherichia coli

36% id,
53% cov

P24920: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Phytophthora parasitica

35% id,
47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory