Curated BLAST for Genomes

 

Curated BLAST

Searching in Pandoraea thiooxydans ATSB16 (GCF_001931675.1)

Found 4 curated entries in PaperBLAST's database that match '2.6.1.82' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pandoraea thiooxydans ATSB16, or try another query

PATSB16_RS01925 PATSB16_03960 WP_047212383.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

A0A4P8GNL5: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Pseudomonas putida

40% id,
92% cov

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

33% id,
83% cov

PATSB16_RS17975 PATSB16_38360 WP_047216723.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

A0A4P8GNL5: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Pseudomonas putida

35% id,
95% cov

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

31% id,
81% cov

PATSB16_RS10730 PATSB16_22940 WP_047214124.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

A0A4P8GNL5: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Pseudomonas putida

36% id,
92% cov

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

33% id,
82% cov

PATSB16_RS17895 PATSB16_38200 WP_047215399.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

A0A4P8GNL5: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Pseudomonas putida

34% id,
91% cov

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

35% id,
70% cov

bioA PATSB16_RS16845 PATSB16_35930 WP_047215213.1: adenosylmethionine--8-amino-7-oxononanoate transaminase
is similar to:
PaperBLAST

A0A4P8GNL5: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Pseudomonas putida

27% id,
97% cov

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

30% id,
83% cov

PATSB16_RS01020 PATSB16_02050 WP_047216038.1: acetylornithine transaminase
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

32% id,
83% cov

A0A4P8GNL5: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Pseudomonas putida

27% id,
94% cov

ectB PATSB16_RS10400 PATSB16_22200 WP_047214066.1: diaminobutyrate--2-oxoglutarate transaminase
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

28% id,
83% cov

A0A4P8GNL5: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Pseudomonas putida

24% id,
92% cov

hemL PATSB16_RS01235 PATSB16_02490 WP_047216084.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

31% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory