Curated BLAST for Genomes

 

Curated BLAST

Searching in Pandoraea thiooxydans ATSB16 (GCF_001931675.1)

Found 3 curated entries in PaperBLAST's database that match '5.4.1.4' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pandoraea thiooxydans ATSB16, or try another query

PATSB16_RS17565 PATSB16_37520 WP_047216711.1: amidohydrolase family protein
is similar to:
PaperBLAST

GLI_AGRFC / A9CEQ7: D-galactarolactone isomerase; GLI; Galactaro delta-lactone isomerase; EC 5.4.1.4 from Agrobacterium fabrum
gli / A9CEQ7: D-galactarolactone isomerase (EC 5.4.1.4) from Agrobacterium fabrum
A9CEQ7: D-galactarolactone isomerase (EC 5.4.1.4) from Agrobacterium tumefaciens

32% id,
95% cov

PATSB16_RS02560 PATSB16_05280 WP_047212487.1: amidohydrolase family protein
is similar to:
PaperBLAST

GLI_AGRFC / A9CEQ7: D-galactarolactone isomerase; GLI; Galactaro delta-lactone isomerase; EC 5.4.1.4 from Agrobacterium fabrum
gli / A9CEQ7: D-galactarolactone isomerase (EC 5.4.1.4) from Agrobacterium fabrum
A9CEQ7: D-galactarolactone isomerase (EC 5.4.1.4) from Agrobacterium tumefaciens

29% id,
93% cov

PATSB16_RS06280 PATSB16_13250 WP_047216324.1: amidohydrolase family protein
is similar to:
PaperBLAST

GLI_AGRFC / A9CEQ7: D-galactarolactone isomerase; GLI; Galactaro delta-lactone isomerase; EC 5.4.1.4 from Agrobacterium fabrum
gli / A9CEQ7: D-galactarolactone isomerase (EC 5.4.1.4) from Agrobacterium fabrum
A9CEQ7: D-galactarolactone isomerase (EC 5.4.1.4) from Agrobacterium tumefaciens

25% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory