Curated BLAST for Genomes

 

Curated BLAST

Searching in Carboxydothermus pertinax Ug1 (GCF_001950255.1)

Found 31 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Carboxydothermus pertinax Ug1, or try another query

cpu_RS02910 cpu_05690 WP_075858500.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

35% id,
98% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

32% id,
93% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

29% id,
76% cov

serA cpu_RS03150 cpu_06160 WP_075858559.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

33% id,
96% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

32% id,
100% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

34% id,
90% cov

More...

cpu_RS01650 cpu_03170 WP_075858258.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

23% id,
98% cov

cpu_RS01680 cpu_03230 WP_075858264.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:
PaperBLAST

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

24% id,
69% cov

dpaA cpu_RS08250 cpu_16090 WP_075859549.1: dipicolinic acid synthetase subunit A
is similar to:
PaperBLAST

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

23% id,
42% cov

cpu_RS05935 cpu_11560 WP_075859123.1: TrkA family potassium uptake protein
is similar to:
PaperBLAST

F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Weizmannia coagulans

36% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory