Curated BLAST for Genomes

 

Curated BLAST

Searching in Carboxydothermus pertinax Ug1 (GCF_001950255.1)

Found 13 curated entries in PaperBLAST's database that match '1.1.2.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Carboxydothermus pertinax Ug1, or try another query

cpu_RS02910 cpu_05690 WP_075858500.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:
PaperBLAST

LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus

33% id,
93% cov

LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio

32% id,
92% cov

LDHD_HUMAN / Q86WU2: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Homo sapiens
LDHD / Q86WU2: mitochondrial D-lactate dehydrogenase (EC 1.1.2.4) from Homo sapiens
Q86WU2: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Homo sapiens

31% id,
93% cov

More...

cpu_RS01680 cpu_03230 WP_075858264.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:
PaperBLAST

DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana
DLD / Q94AX4: D-lactate dehydrogenase (cytochrome c) monomer (EC 1.1.2.4) from Arabidopsis thaliana

26% id,
80% cov

cpu_RS01650 cpu_03170 WP_075858258.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:
PaperBLAST

DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana
DLD / Q94AX4: D-lactate dehydrogenase (cytochrome c) monomer (EC 1.1.2.4) from Arabidopsis thaliana

28% id,
73% cov

DLD1_YEAST / P32891: D-lactate dehydrogenase [cytochrome] 1, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.2.4 from Saccharomyces cerevisiae
DLD1 / P32891: D-lactate dehydrogenase (EC 1.1.2.4) from Saccharomyces cerevisiae

32% id,
38% cov

LDHD_HUMAN / Q86WU2: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Homo sapiens
LDHD / Q86WU2: mitochondrial D-lactate dehydrogenase (EC 1.1.2.4) from Homo sapiens
Q86WU2: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Homo sapiens

30% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory