Curated BLAST for Genomes

 

Curated BLAST

Searching in Carboxydothermus pertinax Ug1 (GCF_001950255.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Carboxydothermus pertinax Ug1, or try another query

thrB cpu_RS04100 cpu_07940 WP_075858772.1: homoserine kinase
is similar to:
PaperBLAST

Echvi_2001: homoserine kinase (EC 2.7.1.39) from Echinicola vietnamensis

33% id,
97% cov

P07128: homoserine kinase (EC 2.7.1.39) from Corynebacterium glutamicum

37% id,
86% cov

KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Escherichia coli
ThrB / b0003: homoserine kinase (EC 2.7.1.39) from Escherichia coli
thrB / GB|BAB96580.2: homoserine kinase; EC 2.7.1.39 from Escherichia coli
thrB / P00547: homoserine kinase (EC 2.7.1.39) from Escherichia coli

31% id,
98% cov

More...

aroB cpu_RS07575 cpu_14770 WP_075859422.1: 3-dehydroquinate synthase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

30% id,
87% cov

cmk cpu_RS04200 cpu_08150 WP_075858791.1: (d)CMP kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

41% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory