Curated BLAST for Genomes

 

Curated BLAST

Searching in Natronorubrum daqingense JX313 (GCF_001971705.1)

Found 66 curated entries in PaperBLAST's database that match '3.5.3.1' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Natronorubrum daqingense JX313, or try another query

rocF BB347_RS06745 BB347_06745 WP_076582194.1: arginase
is similar to:
PaperBLAST

ARGI_BACSU / P39138: Arginase; EC 3.5.3.1 from Bacillus subtilis
argI / P39138: arginase (EC 3.5.3.1) from Bacillus subtilis
P39138: arginase (EC 3.5.3.1) from Bacillus subtilis

50% id,
100% cov

A4IJM8: arginase (EC 3.5.3.1) from Geobacillus thermodenitrificans

49% id,
100% cov

ARGI_BACCD / P53608: Arginase; EC 3.5.3.1 from Bacillus caldovelox
P53608: arginase (EC 3.5.3.1) from [Bacillus] caldovelox

47% id,
100% cov

More...

speB BB347_RS01540 BB347_01540 WP_076579068.1: agmatinase
is similar to:
PaperBLAST

GDAH_HUMAN / Q9BSE5: Guanidino acid hydrolase, mitochondrial; Arginase, mitochondrial; Guanidinobutyrase, mitochondrial; Guanidinopropionase, mitochondrial; EC 3.5.3.-; EC 3.5.3.1; EC 3.5.3.7; EC 3.5.3.17 from Homo sapiens

31% id,
90% cov

ARGI1_ORYSI / B8AU84: Arginase 1, mitochondrial; Arginine amidohydrolase 1; EC 3.5.3.1 from Oryza sativa

32% id,
82% cov

ARG2 / Q5UNS1: arginase (EC 3.5.3.1) from Solanum lycopersicum
Q5UNS1: arginase (EC 3.5.3.1) from Solanum lycopersicum

32% id,
80% cov

More...

BB347_RS07370 BB347_07370 WP_076582366.1: agmatinase family protein
is similar to:
PaperBLAST

ARGI1_ARATH / P46637: Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; AtARGAH1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana
arginase / P46637: arginase (EC 3.5.3.1) from Arabidopsis thaliana

30% id,
89% cov

ARGI_MEDTR / G7JFU5: Arginase, mitochondrial; Agmatinase ARGAH; Arginine amidohydrolase; MtARGAH; EC 3.5.3.1; EC 3.5.3.11 from Medicago truncatula

28% id,
94% cov

GDAH_HUMAN / Q9BSE5: Guanidino acid hydrolase, mitochondrial; Arginase, mitochondrial; Guanidinobutyrase, mitochondrial; Guanidinopropionase, mitochondrial; EC 3.5.3.-; EC 3.5.3.1; EC 3.5.3.7; EC 3.5.3.17 from Homo sapiens

33% id,
78% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

304947-306152 (frame +3) on NZ_CP019327.1 Natronorubrum daqingense strain JX313 chromosome, complete genome
is similar to:
PaperBLAST

GDAH_HUMAN / Q9BSE5: Guanidino acid hydrolase, mitochondrial; Arginase, mitochondrial; Guanidinobutyrase, mitochondrial; Guanidinopropionase, mitochondrial; EC 3.5.3.-; EC 3.5.3.1; EC 3.5.3.7; EC 3.5.3.17 from Homo sapiens
Also see hits to annotated proteins above

31% id,
92% cov

ARG2 / Q5UNS1: arginase (EC 3.5.3.1) from Solanum lycopersicum
Q5UNS1: arginase (EC 3.5.3.1) from Solanum lycopersicum
Also see hits to annotated proteins above

30% id,
93% cov

1507794-1509374 (frame +3) on NZ_CP019327.1 Natronorubrum daqingense strain JX313 chromosome, complete genome
is similar to:
PaperBLAST

ARGI1_ARATH / P46637: Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; AtARGAH1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana
arginase / P46637: arginase (EC 3.5.3.1) from Arabidopsis thaliana
Also see hits to annotated proteins above

29% id,
96% cov

GDAH_MOUSE / A2AS89: Guanidino acid hydrolase, mitochondrial; Arginase, mitochondrial; Guanidinobutyrase, mitochondrial; Guanidinopropionase, mitochondrial; EC 3.5.3.-; EC 3.5.3.1; EC 3.5.3.7; EC 3.5.3.17 from Mus musculus
Also see hits to annotated proteins above

30% id,
87% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory