Curated BLAST for Genomes

 

Curated BLAST

Searching in Thioalkalivibrio halophilus HL17 (GCF_001995255.1)

Found 59 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 43 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thioalkalivibrio halophilus HL17, or try another query

aroE B1A74_RS01755 B1A74_01760 WP_077243594.1: shikimate dehydrogenase
is similar to:
PaperBLAST

Q88RQ5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Pseudomonas putida

51% id,
99% cov

AROE_VIBCH / Q9KVT3: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae

48% id,
97% cov

AROE_ECOLI / P15770: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli
AroE / b3281: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli
aroE / P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli
P15770: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Escherichia coli

47% id,
99% cov

More...

aroB B1A74_RS10960 B1A74_10950 WP_077244670.1: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans

38% id,
21% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

42% id,
11% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

35% id,
11% cov

More...

hemA B1A74_RS06585 B1A74_06580 WP_024328222.1: glutamyl-tRNA reductase
is similar to:
PaperBLAST

A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

30% id,
18% cov

A0A168S2H6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera

28% id,
17% cov

A0A0A0LQ48: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Cucumis sativus

31% id,
14% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory