Curated BLAST for Genomes

 

Curated BLAST

Searching in Thioalkalivibrio halophilus HL17 (GCF_001995255.1)

Found 11 curated entries in PaperBLAST's database that match '2.3.3.21' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thioalkalivibrio halophilus HL17, or try another query

B1A74_RS00550 B1A74_00545 WP_077243465.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.3.21 from Sulfolobus acidocaldarius

24% id,
92% cov

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii
cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii
Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii

22% id,
99% cov

B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp.

25% id,
65% cov

More...

oadA B1A74_RS03445 B1A74_03450 WP_077243770.1: sodium-extruding oxaloacetate decarboxylase subunit alpha
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii
cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii
Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii

25% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory