Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Thioalkalivibrio halophilus HL17 (GCF_001995255.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Thioalkalivibrio halophilus HL17, or try another query

lysA B1A74_RS05725 B1A74_05720 WP_077244043.1: diaminopimelate decarboxylase is similar to:	PaperBLAST
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae	62% id, 100% cov
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	49% id, 99% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	42% id, 96% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	41% id, 96% cov
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron	40% id, 95% cov
DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima	39% id, 96% cov
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	35% id, 98% cov
DCDA_STAAC / Q5HG20: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus	34% id, 98% cov
lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis	35% id, 95% cov
DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli	33% id, 96% cov
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	37% id, 85% cov
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	36% id, 84% cov
DCDA_CORGL / P09890: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum P09890: diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum	32% id, 95% cov
Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis	30% id, 96% cov
ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	34% id, 42% cov
More...

B1A74_RS00275 B1A74_00270 WP_099049978.1: pyridoxal-dependent decarboxylase, exosortase A system-associated is similar to:	PaperBLAST
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	32% id, 93% cov
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae	32% id, 92% cov
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron	31% id, 91% cov
lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis	31% id, 87% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	29% id, 90% cov
DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima	28% id, 92% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	28% id, 90% cov
DCDA_CORGL / P09890: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum P09890: diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum	27% id, 87% cov
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	26% id, 88% cov
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	26% id, 76% cov
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	26% id, 77% cov
ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	30% id, 40% cov
More...

speA B1A74_RS02055 B1A74_02060 WP_077243632.1: biosynthetic arginine decarboxylase is similar to:	PaperBLAST
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	25% id, 74% cov
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae	28% id, 62% cov
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	22% id, 77% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	25% id, 63% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	24% id, 63% cov
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	23% id, 49% cov
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	23% id, 48% cov
More...

B1A74_RS00670 B1A74_00665 WP_018945701.1: aspartate kinase is similar to:	PaperBLAST
ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	29% id, 45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory