Curated BLAST for Genomes

 

Curated BLAST

Searching in Thioalkalivibrio halophilus HL17 (GCF_001995255.1)

Found 4 curated entries in PaperBLAST's database that match 'glutamyl-tRNA(Gln) amidotransferase subunit A' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Thioalkalivibrio halophilus HL17, or try another query

gatA B1A74_RS06550 B1A74_06545 WP_077244138.1: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
is similar to:
PaperBLAST

GATA_BACSU / O06491: Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 from Bacillus subtilis

50% id,
98% cov

GATA_ARATH / Q9LI77: Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Glu-AdT subunit A; EC 6.3.5.7 from Arabidopsis thaliana

48% id,
90% cov

GATA_HUMAN / Q9H0R6: Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Glu-AdT subunit A; Glutaminyl-tRNA synthase-like protein 1; EC 6.3.5.7 from Homo sapiens

39% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

33411-34940 (frame +3) on NZ_MUZR01000018.1 Thioalkalivibrio halophilus strain HL17 Ga0073316_118, whole genome shotgun sequence
is similar to:
PaperBLAST

GATA_BACSU / O06491: Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 from Bacillus subtilis
Also see hits to annotated proteins above

49% id,
100% cov

GATA_ARATH / Q9LI77: Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Glu-AdT subunit A; EC 6.3.5.7 from Arabidopsis thaliana
Also see hits to annotated proteins above

47% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory