Curated BLAST for Genomes

 

Curated BLAST

Searching in Vagococcus penaei CD276T (GCF_001998885.1)

Found 10 curated entries in PaperBLAST's database that match '1.1.1.46' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Vagococcus penaei CD276T, or try another query

BW732_RS01515 BW732_01530 WP_077275131.1: glucose-1-dehydrogenase
is similar to:
PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

35% id,
93% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

35% id,
93% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
93% cov

More...

fabG BW732_RS11280 BW732_11340 WP_077276827.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
91% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
91% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

33% id,
91% cov

More...

BW732_RS04765 BW732_04810 WP_077275711.1: (S)-acetoin forming diacetyl reductase
is similar to:
PaperBLAST

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

33% id,
92% cov

Ac3H11_614: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp.

29% id,
86% cov

BW732_RS00300 BW732_00300 WP_077274914.1: D-threitol dehydrogenase
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

32% id,
92% cov

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

30% id,
96% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

31% id,
92% cov

More...

BW732_RS06395 BW732_06470 WP_077275971.1: SDR family oxidoreductase
is similar to:
PaperBLAST

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

30% id,
94% cov

Ac3H11_614: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp.

30% id,
95% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

29% id,
95% cov

More...

BW732_RS08225 BW732_08295 WP_077276299.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

30% id,
94% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

30% id,
92% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

29% id,
92% cov

More...

BW732_RS01410 BW732_01425 WP_077275113.1: acetoin reductase
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

26% id,
95% cov

Ac3H11_614: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp.

26% id,
87% cov

BW732_RS03750 BW732_03795 WP_077275535.1: SDR family oxidoreductase
is similar to:
PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

30% id,
80% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

32% id,
70% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

32% id,
70% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1724073-1724864 (frame +3) on NZ_CP019609.1 Vagococcus penaei strain CD276T chromosome, complete genome
is similar to:
PaperBLAST

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae
Also see hits to annotated proteins above

29% id,
96% cov

1686584-1687654 (frame +2) on NZ_CP019609.1 Vagococcus penaei strain CD276T chromosome, complete genome
is similar to:
PaperBLAST

SMc00588: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Sinorhizobium meliloti

26% id,
80% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory