Curated BLAST for Genomes

 

Curated BLAST

Searching in Thioalkalivibrio denitrificans ALJD (GCF_002000365.1)

Found 28 curated entries in PaperBLAST's database that match '2.5.1.54' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thioalkalivibrio denitrificans ALJD, or try another query

aroG B1C78_RS04760 B1C78_04805 WP_077278004.1: 3-deoxy-7-phosphoheptulonate synthase AroG
is similar to:
PaperBLAST

AroG / b0754: 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive (EC 2.5.1.54) from Escherichia coli
aroG / P0AB91: 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive (EC 2.5.1.54) from Escherichia coli
C3TIE2: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Escherichia coli

64% id,
100% cov

Q9K169: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Neisseria meningitidis

62% id,
99% cov

2-dehydro-3-deoxyphosphoheptonate aldolase / b1704: 3-deoxy-7-phosphoheptulonate synthase, Trp-sensitive (EC 2.5.1.54) from Escherichia coli
aroH / P00887: 3-deoxy-7-phosphoheptulonate synthase, Trp-sensitive (EC 2.5.1.54) from Escherichia coli

53% id,
99% cov

More...

kdsA B1C78_RS03990 B1C78_04035 WP_077277851.1: 3-deoxy-8-phosphooctulonate synthase
is similar to:
PaperBLAST

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

33% id,
79% cov

A0A482F152: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from uncultured bacterium

28% id,
89% cov

Q9WYH8: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Thermotoga maritima

30% id,
70% cov

More...

pheA B1C78_RS07085 B1C78_07125 WP_077278462.1: prephenate dehydratase
is similar to:
PaperBLAST

P39912: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54); chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

36% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory