Curated BLAST for Genomes

 

Curated BLAST

Searching in Thioalkalivibrio denitrificans ALJD (GCF_002000365.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Thioalkalivibrio denitrificans ALJD, or try another query

lysA B1C78_RS11385 B1C78_11450 WP_077279293.1: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae

 70% id,
100% cov

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

 49% id,
99% cov

P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori

 44% id,
97% cov

More...

B1C78_RS07765 B1C78_07810 WP_077278591.1: pyridoxal-dependent decarboxylase, exosortase A system-associated
is similar to:		 PaperBLAST

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

 33% id,
93% cov

BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron

 33% id,
94% cov

DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima

 32% id,
94% cov

More...

speA B1C78_RS02670 B1C78_02715 WP_077277599.1: biosynthetic arginine decarboxylase
is similar to:		 PaperBLAST

BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron

 23% id,
86% cov

DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii

 28% id,
68% cov

P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori

 26% id,
65% cov

More...

B1C78_RS02020 B1C78_02055 WP_077277469.1: aspartate kinase
is similar to:		 PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

 28% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

38690-40027 (frame +2) on NZ_MVBK01000010.1 Thioalkalivibrio denitrificans strain ALJD Ga0073317_1010, whole genome shotgun sequence
is similar to:		 PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica
Also see hits to annotated proteins above

 27% id,
50% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory