Curated BLAST for Genomes

 

Curated BLAST

Searching in Flavobacterium sp. LM5 (GCF_002017945.1)

Found 11 curated entries in PaperBLAST's database that match '2.3.1.174' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Flavobacterium sp. LM5, or try another query

BXU11_RS06925 BXU11_06935 WP_078211525.1: acetyl-CoA C-acyltransferase
is similar to:
PaperBLAST

pcaF / Q0K4S3: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) from Cupriavidus necator

43% id,
100% cov

paaJ / Q845J8: β-ketoadipyl-CoA thiolase (EC 2.3.1.174; EC 2.3.1.223) from Pseudomonas sp.

43% id,
100% cov

PCAF_PSEKB / Q8VPF1: Beta-ketoadipyl-CoA thiolase; 3-oxoadipyl-CoA thiolase; EC 2.3.1.174 from Pseudomonas knackmussii

43% id,
100% cov

More...

BXU11_RS13695 BXU11_13655 WP_078212920.1: acetyl-CoA C-acyltransferase
is similar to:
PaperBLAST

paaJ / Q845J8: β-ketoadipyl-CoA thiolase (EC 2.3.1.174; EC 2.3.1.223) from Pseudomonas sp.

40% id,
100% cov

pcaF / Q51956: subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) from Pseudomonas putida

40% id,
100% cov

BPHYT_RS17345: bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) from Burkholderia phytofirmans

40% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory