Curated BLAST for Genomes

 

Curated BLAST

Searching in Flavobacterium sp. LM5 (GCF_002017945.1)

Found 36 curated entries in PaperBLAST's database that match '2.3.3.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Flavobacterium sp. LM5, or try another query

aceB BXU11_RS02770 BXU11_02780 WP_078210938.1: malate synthase A
is similar to:
PaperBLAST

MASY_DICDI / Q8T2K9: Malate synthase; EC 2.3.3.9 from Dictyostelium discoideum

54% id,
95% cov

Mas / b4014: malate synthase A (EC 2.3.3.9) from Escherichia coli
aceB / P08997: malate synthase A (EC 2.3.3.9) from Escherichia coli

51% id,
100% cov

Q5YLB8: malate synthase (EC 2.3.3.9) from Paracoccidioides brasiliensis

54% id,
93% cov

More...

aceA BXU11_RS02765 BXU11_02775 WP_024980739.1: isocitrate lyase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

61% id,
43% cov

aceA BXU11_RS17365 BXU11_17360 WP_223253786.1: isocitrate lyase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

61% id,
34% cov

BXU11_RS18250 WP_223253788.1: isocitrate lyase/phosphoenolpyruvate mutase family protein
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

74% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory