Curated BLAST for Genomes

 

Curated BLAST

Searching in Flavobacterium sp. LM5 (GCF_002017945.1)

Found 31 curated entries in PaperBLAST's database that match '2.7.2.1' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Flavobacterium sp. LM5, or try another query

BXU11_RS08385 BXU11_08395 WP_078211974.1: acetate kinase
is similar to:
PaperBLAST

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

50% id,
99% cov

B2RK02: acetate kinase (EC 2.7.2.1) from Porphyromonas gingivalis

47% id,
100% cov

P0CW05: acetate kinase (EC 2.7.2.1) from Methanosarcina mazei

49% id,
97% cov

More...

BXU11_RS04480 BXU11_04490 WP_078211160.1: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

24% id,
96% cov

accC BXU11_RS02955 BXU11_02965 WP_078210953.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

21% id,
97% cov

carB BXU11_RS05935 BXU11_05945 WP_078211336.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

20% id,
69% cov

BXU11_RS11675 BXU11_11710 WP_078212651.1: cupin domain-containing protein
is similar to:
PaperBLAST

EUTQ_CLOD6 / Q187N7: Acetate kinase EutQ; Ethanolamine utilization protein EutQ; EC 2.7.2.1 from Clostridioides difficile

34% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory