Curated BLAST for Genomes

 

Curated BLAST

Searching in Alkalihalobacterium alkalinitrilicum DSM 22532 (GCF_002019605.1)

Found 42 curated entries in PaperBLAST's database that match '1.1.1.95' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Alkalihalobacterium alkalinitrilicum DSM 22532, or try another query

serA BK574_RS10245 WP_078430830.1: phosphoglycerate dehydrogenase
is similar to:		 PaperBLAST

serA / GB|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis

 60% id,
100% cov

Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor

 39% id,
99% cov

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 38% id,
96% cov

More...

BK574_RS21465 WP_078430036.1: D-glycerate dehydrogenase
is similar to:		 PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 36% id,
93% cov

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 33% id,
96% cov

EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica
Q76KF5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Entamoeba histolytica

 27% id,
98% cov

More...

BK574_RS21120 WP_142248010.1: D-glycerate dehydrogenase
is similar to:		 PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 33% id,
97% cov

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 34% id,
80% cov

PGDH1 / A2DLU8: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Trichomonas vaginalis

 32% id,
74% cov

More...

BK574_RS02530 WP_078427359.1: phosphoglycerate dehydrogenase
is similar to:		 PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 30% id,
98% cov

EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica
Q76KF5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Entamoeba histolytica

 28% id,
95% cov

PGDH1 / A2DLU8: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Trichomonas vaginalis

 30% id,
81% cov

More...

BK574_RS02550 WP_078427362.1: C-terminal binding protein
is similar to:		 PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 28% id,
96% cov

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 30% id,
84% cov

PGDH1 / A2DLU8: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Trichomonas vaginalis

 30% id,
82% cov

More...

BK574_RS06735 WP_078428033.1: D-2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

 32% id,
81% cov

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 24% id,
78% cov

serA / GB|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis

 30% id,
48% cov

More...

BK574_RS04485 WP_078427683.1: zinc-binding dehydrogenase
is similar to:		 PaperBLAST

cad / O25732: cinnamyl-alcohol dehydrogenase (EC 1.1.1.2; EC 1.1.1.95; EC 1.1.1.195) from Helicobacter pylori

 26% id,
84% cov

BK574_RS14770 WP_078429128.1: NADPH:quinone reductase
is similar to:		 PaperBLAST

cad / O25732: cinnamyl-alcohol dehydrogenase (EC 1.1.1.2; EC 1.1.1.95; EC 1.1.1.195) from Helicobacter pylori

 23% id,
80% cov

dpaA BK574_RS26645 WP_075385698.1: dipicolinic acid synthetase subunit A
is similar to:		 PaperBLAST

cad / O25732: cinnamyl-alcohol dehydrogenase (EC 1.1.1.2; EC 1.1.1.95; EC 1.1.1.195) from Helicobacter pylori

 27% id,
47% cov

sdaAB BK574_RS26180 WP_078430690.1: L-serine ammonia-lyase, iron-sulfur-dependent subunit beta
is similar to:		 PaperBLAST

serA / GB|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis

 24% id,
37% cov

Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor

 25% id,
35% cov

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli
C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

 25% id,
22% cov

glcD BK574_RS12965 WP_078428877.1: glycolate oxidase subunit GlcD
is similar to:		 PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 27% id,
15% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 25% id,
14% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 31% id,
8% cov

More...

BK574_RS17260 WP_078429444.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 32% id,
6% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 30% id,
7% cov

BK574_RS12960 WP_078428876.1: (Fe-S)-binding protein
is similar to:		 PaperBLAST

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 25% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory