Curated BLAST for Genomes

 

Curated BLAST

Searching in Alkalihalobacterium alkalinitrilicum DSM 22532 (GCF_002019605.1)

Found 38 curated entries in PaperBLAST's database that match '2.3.3.13' as complete word(s).

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Alkalihalobacterium alkalinitrilicum DSM 22532, or try another query

BK574_RS22745 WP_078430192.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

51% id,
99% cov

LEU11_LEPIN / Q8F445: 2-isopropylmalate synthase 1; Alpha-IPM synthase 1; Alpha-isopropylmalate synthase 1; EC 2.3.3.13 from Leptospira interrogans

49% id,
99% cov

LEU1_NEIMB / Q9JZG1: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Neisseria meningitidis
Q9JZG1: 2-isopropylmalate synthase (EC 2.3.3.13) from Neisseria meningitidis

49% id,
96% cov

More...

BK574_RS02120 WP_078427294.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

LEU11_LEPIN / Q8F445: 2-isopropylmalate synthase 1; Alpha-IPM synthase 1; Alpha-isopropylmalate synthase 1; EC 2.3.3.13 from Leptospira interrogans

47% id,
99% cov

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

48% id,
97% cov

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

45% id,
97% cov

More...

cimA BK574_RS10690 WP_078428591.1: citramalate synthase
is similar to:
PaperBLAST

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

36% id,
98% cov

LEU1_METJA / Q58595: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Methanocaldococcus jannaschii
Q58595: 2-isopropylmalate synthase (EC 2.3.3.13) from Methanocaldococcus jannaschii

34% id,
96% cov

BT1861: 2-isopropylmalate synthase (EC 2.3.3.13) from Bacteroides thetaiotaomicron

28% id,
99% cov

More...

dmpG BK574_RS16275 WP_078429325.1: 4-hydroxy-2-oxovalerate aldolase
is similar to:
PaperBLAST

A0A0G2T6D7: 2-isopropylmalate synthase (EC 2.3.3.13) from Solanum pennellii

28% id,
86% cov

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

27% id,
84% cov

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

28% id,
82% cov

More...

pyc BK574_RS25630 WP_078430627.1: pyruvate carboxylase
is similar to:
PaperBLAST

LEU1_METJA / Q58595: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Methanocaldococcus jannaschii
Q58595: 2-isopropylmalate synthase (EC 2.3.3.13) from Methanocaldococcus jannaschii

27% id,
52% cov

BK574_RS03550 WP_078427535.1: hydroxymethylglutaryl-CoA lyase
is similar to:
PaperBLAST

LEU1_METJA / Q58595: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Methanocaldococcus jannaschii
Q58595: 2-isopropylmalate synthase (EC 2.3.3.13) from Methanocaldococcus jannaschii

23% id,
51% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3383872-3384984 (frame -2) on NZ_KV917368.1 Alkalihalobacterium alkalinitrilicum strain DSM 22532 Scaffold1, whole genome shotgun sequence
is similar to:
PaperBLAST

A0A0G2T6D7: 2-isopropylmalate synthase (EC 2.3.3.13) from Solanum pennellii
Also see hits to annotated proteins above

28% id,
94% cov

K4CJ56: 2-isopropylmalate synthase (EC 2.3.3.13) from Solanum lycopersicum
Also see hits to annotated proteins above

26% id,
88% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory