Curated BLAST for Genomes

 

Curated BLAST

Searching in Alkalihalobacterium alkalinitrilicum DSM 22532 (GCF_002019605.1)

Found 68 curated entries in PaperBLAST's database that match '4.2.1.10' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Alkalihalobacterium alkalinitrilicum DSM 22532, or try another query

aroQ BK574_RS11680 WP_075385056.1: type II 3-dehydroquinate dehydratase
is similar to:
PaperBLAST

M1E6S9: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Thermodesulfobium narugense

64% id,
94% cov

B2A551: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Natranaerobius thermophilus

60% id,
97% cov

D4S0D1: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Butyrivibrio crossotus

59% id,
99% cov

More...

aroE BK574_RS12905 WP_075386823.1: shikimate dehydrogenase
is similar to:
PaperBLAST

Q6PUG0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

35% id,
54% cov

A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

37% id,
51% cov

A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

35% id,
49% cov

More...

ptsG BK574_RS22665 WP_078430180.1: glucose-specific PTS transporter subunit IIBC
is similar to:
PaperBLAST

B9CK59: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Lancefieldella rimae

40% id,
22% cov

aroB BK574_RS09920 WP_078428496.1: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

37% id,
23% cov

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

36% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory