Curated BLAST for Genomes

 

Curated BLAST

Searching in Alkalihalobacterium alkalinitrilicum DSM 22532 (GCF_002019605.1)

Found 6 curated entries in PaperBLAST's database that match 'hisF' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Alkalihalobacterium alkalinitrilicum DSM 22532, or try another query

hisF BK574_RS20715 WP_078429927.1: imidazole glycerol phosphate synthase subunit HisF
is similar to:
PaperBLAST

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

59% id,
98% cov

HIS6_THEMA / Q9X0C6: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermotoga maritima

56% id,
98% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

52% id,
99% cov

More...

hisA BK574_RS20710 WP_078429926.1: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
is similar to:
PaperBLAST

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

29% id,
96% cov

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

26% id,
92% cov

HIS6_ECOLI / P60664: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Escherichia coli
HisF / b2025: imidazole glycerol phosphate synthase subunit HisF (EC 4.3.2.10) from Escherichia coli
hisF / P60664: imidazole glycerol phosphate synthase subunit HisF (EC 4.3.2.10) from Escherichia coli

24% id,
89% cov

BK574_RS26035 WP_075385580.1: dihydroorotate dehydrogenase
is similar to:
PaperBLAST

HIS6_THEMA / Q9X0C6: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermotoga maritima

23% id,
74% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

32% id,
33% cov

BK574_RS25540 WP_078430619.1: nitronate monooxygenase
is similar to:
PaperBLAST

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

39% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory