Curated BLAST for Genomes

 

Curated BLAST

Searching in Pantoea rwandensis LMG 26275 (GCF_002095475.1)

Found 5 curated entries in PaperBLAST's database that match '1.5.1.50' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pantoea rwandensis LMG 26275, or try another query

HA51_RS04820 HA51_04770 WP_084932524.1: glucose 1-dehydrogenase
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

28% id,
92% cov

HA51_RS14265 HA51_14085 WP_084935266.1: 3-ketoacyl-ACP reductase FabG2
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

27% id,
90% cov

HA51_RS01220 HA51_01205 WP_084931381.1: SDR family oxidoreductase
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

26% id,
85% cov

HA51_RS00730 HA51_00715 WP_084931207.1: SDR family oxidoreductase
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

26% id,
79% cov

HA51_RS04600 HA51_04550 WP_084932425.1: SDR family oxidoreductase
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

27% id,
69% cov

HA51_RS21180 HA51_20915 WP_084936539.1: SDR family oxidoreductase
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

37% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

147448-148260 (frame +1) on NZ_MLFR01000005.1 Pantoea rwandensis strain LMG 26275 Contig0005_, whole genome shotgun sequence
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum
Also see hits to annotated proteins above

31% id,
94% cov

21346-22251 (frame +1) on NZ_MLFR01000007.1 Pantoea rwandensis strain LMG 26275 Contig0007_, whole genome shotgun sequence
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum
Also see hits to annotated proteins above

27% id,
94% cov

188415-189194 (frame -2) on NZ_MLFR01000002.1 Pantoea rwandensis strain LMG 26275 Contig0002_, whole genome shotgun sequence
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum
Also see hits to annotated proteins above

27% id,
74% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory