Curated BLAST for Genomes

 

Curated BLAST

Searching in Pantoea rwandensis LMG 26275 (GCF_002095475.1)

Found 13 curated entries in PaperBLAST's database that match '3.1.1.15' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pantoea rwandensis LMG 26275, or try another query

HA51_RS00215 HA51_00215 WP_084931114.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

HSERO_RS05225: L-arabinolactonase (EC 3.1.1.15) from Herbaspirillum seropedicae

42% id,
100% cov

ARALA_AZOBR / Q1JUP5: L-arabinolactonase; EC 3.1.1.15 from Azospirillum brasilense

38% id,
98% cov

Shewana3_2088: L-arabinolactonase (EC 3.1.1.15) from Shewanella sp.

36% id,
97% cov

More...

HA51_RS19865 HA51_19615 WP_084936306.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

Pf1N1B4_413: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens

27% id,
94% cov

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

26% id,
93% cov

PfGW456L13_2118: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens

25% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory