Curated BLAST for Genomes

 

Curated BLAST

Searching in Pantoea rwandensis LMG 26275 (GCF_002095475.1)

Found 17 curated entries in PaperBLAST's database that match '3.1.1.25' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pantoea rwandensis LMG 26275, or try another query

HA51_RS00215 HA51_00215 WP_084931114.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

33% id,
98% cov

SMc00883: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Sinorhizobium meliloti

31% id,
95% cov

Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp.

29% id,
94% cov

HA51_RS19925 HA51_19675 WP_084936318.1: phosphotriesterase-related protein
is similar to:
PaperBLAST

Q4J6Z8: arylesterase (EC 3.1.1.2); 1,4-lactonase (EC 3.1.1.25); aryldialkylphosphatase (EC 3.1.8.1) from Sulfolobus acidocaldarius

29% id,
86% cov

Q97VT7: 1,4-lactonase (EC 3.1.1.25); quorum-quenching N-acyl-homoserine lactonase (EC 3.1.1.81); aryldialkylphosphatase (EC 3.1.8.1) from Saccharolobus solfataricus

28% id,
85% cov

F0QXN6: carboxylesterase (EC 3.1.1.1); arylesterase (EC 3.1.1.2); 1,4-lactonase (EC 3.1.1.25); quorum-quenching N-acyl-homoserine lactonase (EC 3.1.1.81); aryldialkylphosphatase (EC 3.1.8.1) from Vulcanisaeta moutnovskia

28% id,
85% cov

More...

HA51_RS19865 HA51_19615 WP_084936306.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

26% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

306512-306808 (frame -3) on NZ_MLFR01000002.1 Pantoea rwandensis strain LMG 26275 Contig0002_, whole genome shotgun sequence
is similar to:
PaperBLAST

B2LYJ5: 1,4-lactonase (EC 3.1.1.25) from Fusarium proliferatum

37% id,
18% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory