Curated BLAST for Genomes

 

Curated BLAST

Searching in Pantoea rwandensis LMG 26275 (GCF_002095475.1)

Found 3 curated entries in PaperBLAST's database that match '4.2.1.100' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pantoea rwandensis LMG 26275, or try another query

HA51_RS04965 HA51_04915 WP_084932587.1: enoyl-CoA hydratase/isomerase family protein
is similar to:
PaperBLAST

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

29% id,
95% cov

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

26% id,
96% cov

HA51_RS05000 HA51_04950 WP_084932602.1: enoyl-CoA hydratase/isomerase family protein
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

27% id,
94% cov

fadB HA51_RS26560 HA51_26255 WP_084938412.1: fatty acid oxidation complex subunit alpha FadB
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

28% id,
77% cov

HA51_RS08785 HA51_08675 WP_034821448.1: crotonase/enoyl-CoA hydratase family protein
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

33% id,
57% cov

fadJ HA51_RS11045 HA51_10915 WP_084934563.1: fatty acid oxidation complex subunit alpha FadJ
is similar to:
PaperBLAST

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

27% id,
69% cov

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

30% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory