Curated BLAST for Genomes

 

Curated BLAST

Searching in Pantoea rwandensis LMG 26275 (GCF_002095475.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pantoea rwandensis LMG 26275, or try another query

tpiA HA51_RS16145 HA51_15930 WP_084935640.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_ECODH / B1XB85: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
TPIS_ECOLI / P0A858: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
Tpi / b3919: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
tpiA / P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli

86% id,
100% cov

TPIS_MORMI / P50921: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina
tpiA / PDB|1AW1_A: triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina
P50921: triose-phosphate isomerase (EC 5.3.1.1) from Moritella marina

65% id,
100% cov

Q8MPF2: triose-phosphate isomerase (EC 5.3.1.1) from Tenebrio molitor

51% id,
98% cov

More...

HA51_RS12930 HA51_12755 WP_084934895.1: triose-phosphate isomerase family protein
is similar to:
PaperBLAST

Q7NAQ4: triose-phosphate isomerase (EC 5.3.1.1) from Mycoplasma gallisepticum

35% id,
98% cov

Q7X216: triose-phosphate isomerase (EC 5.3.1.1) from Klebsiella pneumoniae

35% id,
97% cov

A0A1D3TX75: triose-phosphate isomerase (EC 5.3.1.1) from Anaerobium acetethylicum

34% id,
96% cov

More...

pgk HA51_RS21490 HA51_21225 WP_084936596.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

47% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory