Curated BLAST for Genomes

 

Curated BLAST

Searching in Marivita geojedonensis DPG-138 (GCF_002115805.1)

Found 19 curated entries in PaperBLAST's database that match '1.1.99.6' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Marivita geojedonensis DPG-138, or try another query

MGEO_RS02315 MGEO_02300 WP_085635067.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

PGA1_c29720: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Phaeobacter inhibens

 84% id,
100% cov

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

 65% id,
97% cov

Psest_3841: D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 52% id,
91% cov

More...

glcF MGEO_RS02325 MGEO_02310 WP_085635069.1: glycolate oxidase subunit GlcF
is similar to:		 PaperBLAST

PGA1_c29700: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Phaeobacter inhibens

 80% id,
96% cov

SMc00926: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Sinorhizobium meliloti

 60% id,
97% cov

RR42_RS17315: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Cupriavidus basilensis

 43% id,
100% cov

More...

MGEO_RS02320 MGEO_02305 WP_085635068.1: FAD-binding protein
is similar to:		 PaperBLAST

PGA1_c29710: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Phaeobacter inhibens

 57% id,
100% cov

SMc00833: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Sinorhizobium meliloti

 48% id,
97% cov

RR42_RS17310: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Cupriavidus basilensis

 43% id,
99% cov

More...

MGEO_RS08420 MGEO_08390 WP_085636275.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 35% id,
98% cov

Q974L0: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Sulfurisphaera tokodaii

 35% id,
94% cov

E6N788: (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Candidatus Caldarchaeum

 33% id,
97% cov

More...

MGEO_RS06960 MGEO_06925 WP_085636005.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 33% id,
99% cov

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 33% id,
94% cov

G4RPF4: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Thermoproteus tenax

 30% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory