Curated BLAST for Genomes

 

Curated BLAST

Searching in Marivita geojedonensis DPG-138 (GCF_002115805.1)

Found 30 curated entries in PaperBLAST's database that match '1.13.11.11' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Marivita geojedonensis DPG-138, or try another query

kynA MGEO_RS16405 MGEO_16320 WP_085640327.1: tryptophan 2,3-dioxygenase
is similar to:		 PaperBLAST

RR42_RS15390: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Cupriavidus basilensis

 62% id,
95% cov

PfGW456L13_4292: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Pseudomonas fluorescens

 58% id,
99% cov

T23O_CUPMC / Q1LK00: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Cupriavidus metallidurans
kynA: tryptophan 2,3-dioxygenase; EC 1.13.11.11 from Ralstonia metallidurans

 63% id,
90% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory