Curated BLAST for Genomes

 

Curated BLAST

Searching in Marivita geojedonensis DPG-138 (GCF_002115805.1)

Found 21 curated entries in PaperBLAST's database that match '1.17.1.8' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Marivita geojedonensis DPG-138, or try another query

dapB MGEO_RS01580 MGEO_01570 WP_085634936.1: 4-hydroxy-tetrahydrodipicolinate reductase
is similar to:
PaperBLAST

Q2YJN7: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Brucella abortus

59% id,
100% cov

Q6G2G3: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Bartonella henselae

48% id,
99% cov

Q9K1F1: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Neisseria meningitidis

43% id,
99% cov

More...

dapA MGEO_RS01530 MGEO_01520 WP_085634927.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

35% id,
99% cov

MGEO_RS07475 MGEO_07440 WP_085636096.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

27% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory