Curated BLAST for Genomes

 

Curated BLAST

Searching in Marivita geojedonensis DPG-138 (GCF_002115805.1)

Found 15 curated entries in PaperBLAST's database that match '2.7.2.15' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Marivita geojedonensis DPG-138, or try another query

MGEO_RS02500 MGEO_02480 WP_085635099.1: acetate/propionate family kinase
is similar to:
PaperBLAST

TDCD_ECOLI / P11868: Propionate kinase; EC 2.7.2.15 from Escherichia coli
YhaA / b3115: propionate kinase (EC 2.7.2.7; EC 2.7.2.1; EC 2.7.2.15; EC 2.7.2.14) from Escherichia coli

41% id,
97% cov

TDCD_SALTY / O06961: Propionate kinase; EC 2.7.2.15 from Salmonella typhimurium
O06961: propionate kinase (EC 2.7.2.15) from Salmonella enterica

41% id,
97% cov

ackA / P71104: acetate kinase monomer (EC 2.7.2.15) from Clostridium acetobutylicum

39% id,
98% cov

More...

MGEO_RS00660 MGEO_00655 WP_085634766.1: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

29% id,
92% cov

accC MGEO_RS14815 MGEO_14735 WP_085639424.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

24% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory