Curated BLAST for Genomes

 

Curated BLAST

Searching in Marivita geojedonensis DPG-138 (GCF_002115805.1)

Found 52 curated entries in PaperBLAST's database that match '3.1.3.3' as complete word(s).

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Marivita geojedonensis DPG-138, or try another query

serB MGEO_RS02180 MGEO_02165 WP_085635040.1: phosphoserine phosphatase SerB
is similar to:
PaperBLAST

SERB_STRT2 / Q5M3B3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptococcus thermophilus

44% id,
94% cov

SERB_POLSJ / Q12A06: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Polaromonas sp.

46% id,
89% cov

SERB_LACLA / Q9CHW3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Lactococcus lactis

41% id,
97% cov

More...

serA MGEO_RS02170 MGEO_02155 WP_085635038.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

36% id,
52% cov

MGEO_RS12740 MGEO_12685 WP_085638251.1: SpoIIE family protein phosphatase
is similar to:
PaperBLAST

O07014: phosphoserine phosphatase (EC 3.1.3.3) from Bacillus subtilis

23% id,
67% cov

MGEO_RS14935 MGEO_14855 WP_085639493.1: D-glycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

28% id,
48% cov

MGEO_RS15775 MGEO_15690 WP_085639970.1: TIGR01459 family HAD-type hydrolase
is similar to:
PaperBLAST

PSP_BACSU / P94512: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Bacillus subtilis

37% id,
25% cov

MGEO_RS00100 MGEO_00100 WP_085634668.1: glyoxylate/hydroxypyruvate reductase A
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

32% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

435143-436831 (frame -3) on NZ_JFKC01000001.1 Marivita geojedonensis strain DPG-138 contig1, whole genome shotgun sequence
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis
Also see hits to annotated proteins above

35% id,
58% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory