Curated BLAST for Genomes

 

Curated BLAST

Searching in Marivita geojedonensis DPG-138 (GCF_002115805.1)

Found 5 curated entries in PaperBLAST's database that match '4.2.1.12' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Marivita geojedonensis DPG-138, or try another query

edd MGEO_RS10995 MGEO_10945 WP_085637224.1: phosphogluconate dehydratase
is similar to:
PaperBLAST

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

57% id,
100% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

57% id,
99% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

55% id,
99% cov

ilvD MGEO_RS01140 MGEO_01130 WP_085634854.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

30% id,
88% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

30% id,
83% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

30% id,
83% cov

MGEO_RS17335 MGEO_17250 WP_085640705.1: IlvD/Edd family dehydratase
is similar to:
PaperBLAST

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

28% id,
88% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

32% id,
73% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

28% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory