Curated BLAST for Genomes

 

Curated BLAST

Searching in Marivita geojedonensis DPG-138 (GCF_002115805.1)

Found 6 curated entries in PaperBLAST's database that match '4.2.1.140' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Marivita geojedonensis DPG-138, or try another query

MGEO_RS08380 MGEO_08350 WP_085636267.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus

34% id,
94% cov

YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC 4.2.1.140) from Escherichia coli

32% id,
94% cov

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

31% id,
91% cov

MGEO_RS06650 MGEO_06615 WP_085635947.1: enolase C-terminal domain-like protein
is similar to:
PaperBLAST

YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC 4.2.1.140) from Escherichia coli

24% id,
91% cov

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

22% id,
87% cov

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus

23% id,
55% cov

MGEO_RS04825 MGEO_04810 WP_085635558.1: enolase C-terminal domain-like protein
is similar to:
PaperBLAST

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

25% id,
86% cov

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus

22% id,
74% cov

MGEO_RS03455 MGEO_03430 WP_085635323.1: muconate/chloromuconate family cycloisomerase
is similar to:
PaperBLAST

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

22% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory