Curated BLAST for Genomes

 

Curated BLAST

Searching in Marivita geojedonensis DPG-138 (GCF_002115805.1)

Found 14 curated entries in PaperBLAST's database that match '4.2.1.25' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Marivita geojedonensis DPG-138, or try another query

MGEO_RS17335 MGEO_17250 WP_085640705.1: IlvD/Edd family dehydratase
is similar to:
PaperBLAST

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

44% id,
100% cov

AO356_24585: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

44% id,
100% cov

Pf6N2E2_609: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

44% id,
100% cov

More...

ilvD MGEO_RS01140 MGEO_01130 WP_085634854.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum
I9XDU6: L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum

34% id,
97% cov

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

35% id,
93% cov

Pf6N2E2_609: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

35% id,
90% cov

More...

MGEO_RS08380 MGEO_08350 WP_085636267.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

34% id,
89% cov

xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii

32% id,
88% cov

edd MGEO_RS10995 MGEO_10945 WP_085637224.1: phosphogluconate dehydratase
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum
I9XDU6: L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum

30% id,
87% cov

HSERO_RS05205: L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae

30% id,
85% cov

ARADA_AZOBR / Q1JUQ1: L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense
Q1JUQ1: L-Arabinonate dehydratase (EC 4.2.1.25) from Azospirillum brasilense

29% id,
88% cov

More...

MGEO_RS04825 MGEO_04810 WP_085635558.1: enolase C-terminal domain-like protein
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

25% id,
87% cov

MGEO_RS06650 MGEO_06615 WP_085635947.1: enolase C-terminal domain-like protein
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

19% id,
90% cov

MGEO_RS03455 MGEO_03430 WP_085635323.1: muconate/chloromuconate family cycloisomerase
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

22% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory