Curated BLAST for Genomes

 

Curated BLAST

Searching in Marivita geojedonensis DPG-138 (GCF_002115805.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Marivita geojedonensis DPG-138, or try another query

thrC MGEO_RS06980 MGEO_06945 WP_085636009.1: threonine synthase
is similar to:
PaperBLAST

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

57% id,
99% cov

THRC_CORGL / P23669: Threonine synthase; TS; EC 4.2.3.1 from Corynebacterium glutamicum

43% id,
99% cov

Q2SWH9: threonine synthase (EC 4.2.3.1) from Burkholderia thailandensis

41% id,
99% cov

More...

MGEO_RS08355 MGEO_08325 WP_085636262.1: threonine/serine dehydratase
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

27% id,
88% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

26% id,
81% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

31% id,
42% cov

MGEO_RS03200 MGEO_03180 WP_085635277.1: cysteine synthase family protein
is similar to:
PaperBLAST

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

25% id,
83% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

25% id,
57% cov

MGEO_RS09405 MGEO_09365 WP_085636458.1: cysteine synthase A
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

24% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory