Curated BLAST for Genomes

 

Curated BLAST

Searching in Marivita geojedonensis DPG-138 (GCF_002115805.1)

Found 52 curated entries in PaperBLAST's database that match '4.3.1.17' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Marivita geojedonensis DPG-138, or try another query

MGEO_RS08740 MGEO_08710 WP_085636343.1: L-serine ammonia-lyase
is similar to:		 PaperBLAST

PfGW456L13_4954: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

 53% id,
100% cov

Pf6N2E2_5557: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

 53% id,
100% cov

Pf1N1B4_1013: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

 52% id,
100% cov

More...

bhcB MGEO_RS12170 MGEO_12115 WP_085637913.1: beta-hydroxyaspartate dehydratase BhcB
is similar to:		 PaperBLAST

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Arabidopsis thaliana

 49% id,
95% cov

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

 47% id,
91% cov

SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens

 43% id,
94% cov

More...

MGEO_RS18545 MGEO_18460 WP_085641172.1: D-cysteine desulfhydrase
is similar to:		 PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

 41% id,
95% cov

MGEO_RS08355 MGEO_08325 WP_085636262.1: threonine/serine dehydratase
is similar to:		 PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

 40% id,
96% cov

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Schizosaccharomyces pombe

 39% id,
97% cov

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

 39% id,
94% cov

More...

eutB MGEO_RS01815 MGEO_01800 WP_085634976.1: hydroxyectoine utilization dehydratase EutB
is similar to:		 PaperBLAST

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

 36% id,
94% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

 34% id,
96% cov

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

 35% id,
88% cov

More...

MGEO_RS10120 MGEO_10070 WP_085636717.1: threonine/serine dehydratase
is similar to:		 PaperBLAST

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

 34% id,
93% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

 34% id,
93% cov

SDSL_RAT / A0A6N3IN21: Serine dehydratase-like; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Rattus norvegicus

 32% id,
95% cov

More...

ilvA MGEO_RS12755 MGEO_12700 WP_085638260.1: threonine ammonia-lyase IlvA
is similar to:		 PaperBLAST

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens

 32% id,
97% cov

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

 31% id,
98% cov

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

 32% id,
92% cov

More...

MGEO_RS04785 MGEO_04770 WP_085635550.1: pyridoxal-phosphate dependent enzyme
is similar to:		 PaperBLAST

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens

 31% id,
67% cov

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

 28% id,
63% cov

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

 26% id,
61% cov

More...

MGEO_RS03200 MGEO_03180 WP_085635277.1: cysteine synthase family protein
is similar to:		 PaperBLAST

SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens

 25% id,
72% cov

trpB MGEO_RS07970 MGEO_07940 WP_085636193.1: tryptophan synthase subunit beta
is similar to:		 PaperBLAST

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

 26% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory