Curated BLAST for Genomes

 

Curated BLAST

Searching in Marivita geojedonensis DPG-138 (GCF_002115805.1)

Found 23 curated entries in PaperBLAST's database that match '4.3.1.18' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Marivita geojedonensis DPG-138, or try another query

bhcB MGEO_RS12170 MGEO_12115 WP_085637913.1: beta-hydroxyaspartate dehydratase BhcB
is similar to:
PaperBLAST

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Arabidopsis thaliana

49% id,
95% cov

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

47% id,
91% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

43% id,
98% cov

More...

MGEO_RS18545 MGEO_18460 WP_085641172.1: D-cysteine desulfhydrase
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

41% id,
95% cov

MGEO_RS08355 MGEO_08325 WP_085636262.1: threonine/serine dehydratase
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Schizosaccharomyces pombe

39% id,
97% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

38% id,
98% cov

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

39% id,
94% cov

More...

eutB MGEO_RS01815 MGEO_01800 WP_085634976.1: hydroxyectoine utilization dehydratase EutB
is similar to:
PaperBLAST

SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus

32% id,
95% cov

SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens

32% id,
93% cov

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Schizosaccharomyces pombe

31% id,
96% cov

More...

MGEO_RS10120 MGEO_10070 WP_085636717.1: threonine/serine dehydratase
is similar to:
PaperBLAST

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Arabidopsis thaliana

32% id,
92% cov

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

31% id,
91% cov

SRR_MOUSE / Q9QZX7: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus

31% id,
90% cov

More...

ilvA MGEO_RS12755 MGEO_12700 WP_085638260.1: threonine ammonia-lyase IlvA
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Schizosaccharomyces pombe

28% id,
93% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

25% id,
97% cov

bhcC MGEO_RS12175 MGEO_12120 WP_085637916.1: 3-hydroxy-D-aspartate aldolase BhcC
is similar to:
PaperBLAST

DSD1_DICDI / Q54XE5: D-serine dehydratase; D-serine deaminase; EC 4.3.1.18 from Dictyostelium discoideum

25% id,
94% cov

MGEO_RS03200 MGEO_03180 WP_085635277.1: cysteine synthase family protein
is similar to:
PaperBLAST

SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens

25% id,
72% cov

MGEO_RS09405 MGEO_09365 WP_085636458.1: cysteine synthase A
is similar to:
PaperBLAST

Q9HYN9: D-Serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas aeruginosa

24% id,
53% cov

AO353_25210: D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens

23% id,
53% cov

Q4A041: D-Serine ammonia-lyase (EC 4.3.1.18) from Staphylococcus saprophyticus

29% id,
15% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory