Curated BLAST for Genomes

 

Curated BLAST

Searching in Marivita geojedonensis DPG-138 (GCF_002115805.1)

Found 1 curated entries in PaperBLAST's database that match 'acetohydroxyacid synthase subunit B' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Marivita geojedonensis DPG-138, or try another query

MGEO_RS06270 MGEO_06235 WP_085635848.1: acetolactate synthase 3 large subunit
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

53% id,
96% cov

MGEO_RS19930 MGEO_19820 WP_085641493.1: 5-guanidino-2-oxopentanoate decarboxylase
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

29% id,
92% cov

MGEO_RS04765 MGEO_04750 WP_085635546.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

26% id,
93% cov

xsc MGEO_RS02505 MGEO_02485 WP_085635100.1: sulfoacetaldehyde acetyltransferase
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

26% id,
91% cov

MGEO_RS06620 MGEO_06585 WP_085635941.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

25% id,
94% cov

MGEO_RS07590 MGEO_07555 WP_085636118.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

39% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

6128-7816 (frame -1) on NZ_JFKC01000037.1 Marivita geojedonensis strain DPG-138 contig37, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

29% id,
94% cov

504554-506422 (frame -3) on NZ_JFKC01000001.1 Marivita geojedonensis strain DPG-138 contig1, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

26% id,
93% cov

325796-327496 (frame -1) on NZ_JFKC01000002.1 Marivita geojedonensis strain DPG-138 contig2, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

26% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory