Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylocystis bryophila S285 (GCF_002117405.1)

Found 8 curated entries in PaperBLAST's database that match '1.1.1.140' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Methylocystis bryophila S285, or try another query

fabG B1812_RS02990 B1812_02995 WP_085770280.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

D4I194: sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Erwinia amylovora

32% id,
99% cov

BWI76_RS01745: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

30% id,
97% cov

SRLD_ECOLI / P05707: Sorbitol-6-phosphate 2-dehydrogenase; Glucitol-6-phosphate dehydrogenase; Ketosephosphate reductase; EC 1.1.1.140 from Escherichia coli
GutD / b2705: sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Escherichia coli
srlD: sorbitol-6-phosphate dehydrogenase; EC 1.1.1.140 from Escherichia coli
srlD / P05707: sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Escherichia coli

29% id,
100% cov

B1812_RS13135 B1812_13190 WP_085771999.1: glucose 1-dehydrogenase
is similar to:
PaperBLAST

BWI76_RS01745: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

31% id,
97% cov

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

31% id,
97% cov

B1812_RS20800 B1812_20920 WP_199769006.1: SDR family oxidoreductase
is similar to:
PaperBLAST

BWI76_RS01745: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

31% id,
97% cov

B1812_RS09250 B1812_09290 WP_085771336.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

BWI76_RS01745: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

31% id,
95% cov

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

29% id,
96% cov

D4I194: sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Erwinia amylovora

28% id,
97% cov

More...

B1812_RS03950 B1812_03960 WP_085770439.1: 3-hydroxybutyrate dehydrogenase
is similar to:
PaperBLAST

BWI76_RS01745: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

28% id,
97% cov

B1812_RS16415 B1812_16510 WP_245300271.1: SDR family oxidoreductase
is similar to:
PaperBLAST

BWI76_RS01745: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

28% id,
97% cov

B1812_RS07155 B1812_07180 WP_085770982.1: SDR family oxidoreductase
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

27% id,
88% cov

D4I194: sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Erwinia amylovora

27% id,
70% cov

B1812_RS09665 B1812_09715 WP_085771405.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

27% id,
80% cov

BWI76_RS01745: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

23% id,
78% cov

B1812_RS10270 B1812_10325 WP_085771507.1: SDR family oxidoreductase
is similar to:
PaperBLAST

BWI76_RS01745: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

31% id,
67% cov

B1812_RS05065 B1812_05085 WP_085770612.1: SDR family oxidoreductase
is similar to:
PaperBLAST

BWI76_RS01745: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

27% id,
69% cov

B1812_RS18660 B1812_18780 WP_085772932.1: SDR family oxidoreductase
is similar to:
PaperBLAST

BWI76_RS01745: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

25% id,
69% cov

B1812_RS01315 B1812_01310 WP_085769986.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

BWI76_RS01745: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

21% id,
78% cov

B1812_RS21345 B1812_21470 WP_245300008.1: SDR family oxidoreductase
is similar to:
PaperBLAST

D4I194: sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Erwinia amylovora

30% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1544753-1545598 (frame -1) on NZ_CP019948.1 Methylocystis bryophila strain S285 chromosome, complete genome
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans
Also see hits to annotated proteins above

27% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory