Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylocystis bryophila S285 (GCF_002117405.1)

Found 6 curated entries in PaperBLAST's database that match '1.1.99.2' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methylocystis bryophila S285, or try another query

B1812_RS08345 B1812_08380 WP_085771178.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

L2HDH_ACHAE / A0A0M7LBC1: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Achromobacter aegrifaciens

57% id,
99% cov

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

55% id,
97% cov

L2HDH_ARATH / Q9LES4: L-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.2 from Arabidopsis thaliana

46% id,
83% cov

More...

B1812_RS21390 B1812_21515 WP_245300009.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

L2HDH_ACHAE / A0A0M7LBC1: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Achromobacter aegrifaciens

55% id,
98% cov

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

55% id,
96% cov

L2HDH_ARATH / Q9LES4: L-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.2 from Arabidopsis thaliana

46% id,
82% cov

More...

B1812_RS11135 B1812_11180 WP_085771654.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

27% id,
96% cov

B1812_RS04135 B1812_04150 WP_085770468.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

46% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4520469-4520852 (frame -3) on NZ_CP019948.1 Methylocystis bryophila strain S285 chromosome, complete genome
is similar to:
PaperBLAST

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis
Also see hits to annotated proteins above

50% id,
15% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory