Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylocystis bryophila S285 (GCF_002117405.1)

Found 5 curated entries in PaperBLAST's database that match '4.1.2.20' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methylocystis bryophila S285, or try another query

dapA B1812_RS00335 B1812_00340 WP_085769814.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

31% id,
98% cov

dapA B1812_RS13730 B1812_13785 WP_085772095.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

32% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory