Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylocystis bryophila S285 (GCF_002117405.1)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.150' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Methylocystis bryophila S285, or try another query

B1812_RS05255 B1812_05275 WP_085770649.1: enoyl-CoA hydratase
is similar to:
PaperBLAST

ECHS1 / Q58DM8: short chain enoyl-CoA hydratase subunit (EC 4.2.1.150) from Bos taurus

56% id,
87% cov

crt1 / A5N5C7: crotonase (EC 4.2.1.150) from Clostridium kluyveri

46% id,
100% cov

CRT_CLOAB / P52046: Short-chain-enoyl-CoA hydratase; 3-hydroxybutyryl-CoA dehydratase; Crotonase; EC 4.2.1.150 from Clostridium acetobutylicum
crt / P52046: crotonase monomer (EC 4.2.1.74; EC 4.2.1.150) from Clostridium acetobutylicum
P52046: short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Clostridium acetobutylicum

45% id,
100% cov

More...

B1812_RS16295 B1812_16390 WP_085773782.1: enoyl-CoA hydratase-related protein
is similar to:
PaperBLAST

crt1 / A5N5C7: crotonase (EC 4.2.1.150) from Clostridium kluyveri

34% id,
97% cov

B1812_RS02275 B1812_02275 WP_085770155.1: enoyl-CoA hydratase-related protein
is similar to:
PaperBLAST

CRT_CLOAB / P52046: Short-chain-enoyl-CoA hydratase; 3-hydroxybutyryl-CoA dehydratase; Crotonase; EC 4.2.1.150 from Clostridium acetobutylicum
crt / P52046: crotonase monomer (EC 4.2.1.74; EC 4.2.1.150) from Clostridium acetobutylicum
P52046: short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Clostridium acetobutylicum

29% id,
96% cov

Msed_0399 / A4YDS4: crotonyl-CoA hydratase/(S)-3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.35; EC 4.2.1.150) from Metallosphaera sedula
A4YDS4: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Metallosphaera sedula

34% id,
39% cov

Q9WTK2: short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Mus musculus

25% id,
43% cov

More...

B1812_RS17255 B1812_17355 WP_085772689.1: enoyl-CoA hydratase-related protein
is similar to:
PaperBLAST

crt1 / A5N5C7: crotonase (EC 4.2.1.150) from Clostridium kluyveri

29% id,
95% cov

CRCH_SYNWW / Q0AVM1: Crotonyl-CoA hydratase; EC 4.2.1.150 from Syntrophomonas wolfei

28% id,
95% cov

CRT_CLOAB / P52046: Short-chain-enoyl-CoA hydratase; 3-hydroxybutyryl-CoA dehydratase; Crotonase; EC 4.2.1.150 from Clostridium acetobutylicum
crt / P52046: crotonase monomer (EC 4.2.1.74; EC 4.2.1.150) from Clostridium acetobutylicum
P52046: short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Clostridium acetobutylicum

27% id,
97% cov

More...

B1812_RS16315 B1812_16410 WP_085772528.1: enoyl-CoA hydratase/isomerase family protein
is similar to:
PaperBLAST

crt1 / A5N5C7: crotonase (EC 4.2.1.150) from Clostridium kluyveri

29% id,
94% cov

CRT_CLOAB / P52046: Short-chain-enoyl-CoA hydratase; 3-hydroxybutyryl-CoA dehydratase; Crotonase; EC 4.2.1.150 from Clostridium acetobutylicum
crt / P52046: crotonase monomer (EC 4.2.1.74; EC 4.2.1.150) from Clostridium acetobutylicum
P52046: short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Clostridium acetobutylicum

25% id,
95% cov

CRCH_SYNWW / Q0AVM1: Crotonyl-CoA hydratase; EC 4.2.1.150 from Syntrophomonas wolfei

24% id,
90% cov

More...

scpB B1812_RS00705 B1812_00700 WP_085769878.1: methylmalonyl-CoA decarboxylase
is similar to:
PaperBLAST

crt1 / A5N5C7: crotonase (EC 4.2.1.150) from Clostridium kluyveri

27% id,
96% cov

CRCH_SYNWW / Q0AVM1: Crotonyl-CoA hydratase; EC 4.2.1.150 from Syntrophomonas wolfei

26% id,
97% cov

CRT_CLOAB / P52046: Short-chain-enoyl-CoA hydratase; 3-hydroxybutyryl-CoA dehydratase; Crotonase; EC 4.2.1.150 from Clostridium acetobutylicum
crt / P52046: crotonase monomer (EC 4.2.1.74; EC 4.2.1.150) from Clostridium acetobutylicum
P52046: short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Clostridium acetobutylicum

26% id,
95% cov

More...

B1812_RS13170 B1812_13225 WP_085772004.1: 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
is similar to:
PaperBLAST

crt1 / A5N5C7: crotonase (EC 4.2.1.150) from Clostridium kluyveri

31% id,
70% cov

CRCH_SYNWW / Q0AVM1: Crotonyl-CoA hydratase; EC 4.2.1.150 from Syntrophomonas wolfei

30% id,
70% cov

CRT_CLOAB / P52046: Short-chain-enoyl-CoA hydratase; 3-hydroxybutyryl-CoA dehydratase; Crotonase; EC 4.2.1.150 from Clostridium acetobutylicum
crt / P52046: crotonase monomer (EC 4.2.1.74; EC 4.2.1.150) from Clostridium acetobutylicum
P52046: short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Clostridium acetobutylicum

29% id,
69% cov

More...

B1812_RS19300 B1812_19425 WP_085773028.1: 3-hydroxybutyryl-CoA dehydrogenase
is similar to:
PaperBLAST

Msed_0399 / A4YDS4: crotonyl-CoA hydratase/(S)-3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.35; EC 4.2.1.150) from Metallosphaera sedula
A4YDS4: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Metallosphaera sedula

41% id,
43% cov

Msed_0399 / A4YDS4: crotonyl-CoA hydratase/(S)-3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.35; EC 4.2.1.150) from Metallosphaera sedula
A4YDS4: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Metallosphaera sedula

38% id,
17% cov

B1812_RS04155 B1812_04170 WP_085773494.1: 3-hydroxybutyryl-CoA dehydrogenase
is similar to:
PaperBLAST

Msed_0399 / A4YDS4: crotonyl-CoA hydratase/(S)-3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.35; EC 4.2.1.150) from Metallosphaera sedula
A4YDS4: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Metallosphaera sedula

34% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1138287-1139105 (frame +3) on NZ_CP019948.1 Methylocystis bryophila strain S285 chromosome, complete genome
is similar to:
PaperBLAST

ECHS1 / Q58DM8: short chain enoyl-CoA hydratase subunit (EC 4.2.1.150) from Bos taurus
Also see hits to annotated proteins above

54% id,
93% cov

Q9Y232: short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Homo sapiens
Also see hits to annotated proteins above

26% id,
44% cov

Q9WTK2: short-chain-enoyl-CoA hydratase (EC 4.2.1.150) from Mus musculus
Also see hits to annotated proteins above

25% id,
44% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory