Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 31 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS06210 BZY95_06230 WP_086509103.1: D-glycerate dehydrogenase
is similar to:
PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

38% id,
92% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

32% id,
96% cov

Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii

27% id,
100% cov

More...

BZY95_RS18420 BZY95_18525 WP_086511349.1: D-2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

35% id,
92% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

37% id,
82% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

30% id,
88% cov

More...

BZY95_RS20845 BZY95_20965 WP_086511807.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

32% id,
98% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

37% id,
48% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

38% id,
33% cov

serA BZY95_RS14570 BZY95_14650 WP_086510640.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

35% id,
89% cov

LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici
ldhD / GI|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici

26% id,
95% cov

E0NDE9: D-lactate dehydrogenase (EC 1.1.1.28) from Pediococcus acidilactici

26% id,
95% cov

More...

BZY95_RS09535 BZY95_09565 WP_086509740.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

31% id,
94% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

30% id,
77% cov

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

33% id,
45% cov

BZY95_RS01720 BZY95_01730 WP_086508280.1: D-2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium

31% id,
93% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

31% id,
88% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

27% id,
95% cov

More...

glcD BZY95_RS20765 BZY95_20885 WP_086511792.1: glycolate oxidase subunit GlcD
is similar to:
PaperBLAST

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

30% id,
93% cov

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

27% id,
91% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

29% id,
72% cov

BZY95_RS21230 BZY95_21345 WP_086511882.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis

28% id,
95% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

29% id,
89% cov

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

29% id,
81% cov

More...

pdxB BZY95_RS15710 BZY95_15790 WP_086510840.1: 4-phosphoerythronate dehydrogenase PdxB
is similar to:
PaperBLAST

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

35% id,
74% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

28% id,
81% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

27% id,
70% cov

More...

BZY95_RS11630 BZY95_11665 WP_086510087.1: glyoxylate/hydroxypyruvate reductase A
is similar to:
PaperBLAST

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

29% id,
79% cov

vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium

29% id,
68% cov

CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides
D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides

28% id,
53% cov

More...

BZY95_RS20885 BZY95_21005 WP_086511814.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:
PaperBLAST

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

28% id,
55% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

26% id,
47% cov

glcE BZY95_RS20760 BZY95_20880 WP_086511791.1: glycolate oxidase subunit GlcE
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

31% id,
36% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

32% id,
25% cov

BZY95_RS20000 BZY95_20115 WP_140162551.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

34% id,
23% cov

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

33% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory