Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 7 curated entries in PaperBLAST's database that match '1.1.1.376' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS16540 BZY95_16635 WP_086510986.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

ARAA_AZOBR / Q53TZ2: L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC 1.1.1.376; EC 1.1.1.120; EC 1.1.1.48 from Azospirillum brasilense
Q53TZ2: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Azospirillum brasilense

53% id,
98% cov

BZY95_RS14775 BZY95_14850 WP_086510673.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

ARADH_HALVD / D4GP33: L-arabinose 1-dehydrogenase (NAD(P)(+)); L-AraDH; EC 1.1.1.376 from Haloferax volcanii
xacB / D4GP33: L-arabinose 1-dehydrogenase (NADP+) monomer (EC 1.1.1.376) from Haloferax volcanii
D4GP33: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376); L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Haloferax volcanii

31% id,
98% cov

BZY95_RS16790 BZY95_16885 WP_086511042.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

D4GR07: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Haloferax volcanii

24% id,
94% cov

ARAA_AZOBR / Q53TZ2: L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC 1.1.1.376; EC 1.1.1.120; EC 1.1.1.48 from Azospirillum brasilense
Q53TZ2: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Azospirillum brasilense

32% id,
57% cov

BZY95_RS08085 BZY95_08115 WP_086509435.1: oxidoreductase
is similar to:
PaperBLAST

ARAA_AZOBR / Q53TZ2: L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC 1.1.1.376; EC 1.1.1.120; EC 1.1.1.48 from Azospirillum brasilense
Q53TZ2: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Azospirillum brasilense

28% id,
69% cov

BZY95_RS03490 BZY95_03505 WP_086508598.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

D4GR07: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Haloferax volcanii

26% id,
53% cov

BZY95_RS18665 BZY95_18780 WP_086511396.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

D4GR07: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Haloferax volcanii

25% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory