Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 37 curated entries in PaperBLAST's database that match '1.1.1.41' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Halomonas desiderata SP1, or try another query

icd BZY95_RS15605 BZY95_15680 WP_010627814.1: NADP-dependent isocitrate dehydrogenase
is similar to:		 PaperBLAST

Q8GAX0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Acidithiobacillus thiooxidans

 60% id,
98% cov

Q8U488: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Pyrococcus furiosus

 48% id,
98% cov

IDH3A_MOUSE / Q9D6R2: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Mus musculus
Q9D6R2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Mus musculus

 33% id,
89% cov

More...

BZY95_RS15600 BZY95_15675 WP_086510825.1: NADP-dependent isocitrate dehydrogenase
is similar to:		 PaperBLAST

J4X756: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Campylobacter sp.

 49% id,
100% cov

A0A0M4S9Q1: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Campylobacter curvus

 49% id,
100% cov

BZY95_RS13880 BZY95_13955 WP_086510509.1: isocitrate/isopropylmalate family dehydrogenase
is similar to:		 PaperBLAST

IDH3A_CAEEL / Q93714: Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Caenorhabditis elegans

 35% id,
92% cov

G1APK3: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rhodotorula toruloides

 35% id,
91% cov

Q8U488: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Pyrococcus furiosus

 32% id,
94% cov

More...

BZY95_RS12740 BZY95_12780 WP_086510301.1: tartrate dehydrogenase
is similar to:		 PaperBLAST

IDH2_YEAST / P28241: Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae
P28241: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae

 36% id,
89% cov

IDH3A_CAEEL / Q93714: Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Caenorhabditis elegans

 34% id,
92% cov

IDH6_ARATH / Q8LG77: Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial; IDH-VI; Isocitric dehydrogenase 6; NAD(+)-specific ICDH 6; EC 1.1.1.41 from Arabidopsis thaliana
Q8LG77: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana

 35% id,
87% cov

More...

leuB BZY95_RS04410 BZY95_04425 WP_086508767.1: 3-isopropylmalate dehydrogenase
is similar to:		 PaperBLAST

IDH3A_HUMAN / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Homo sapiens
P50213: isocitrate dehydrogenase (NAD+) (subunit 2/2) (EC 1.1.1.41) from Homo sapiens

 34% id,
90% cov

IDH3A_MOUSE / Q9D6R2: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Mus musculus
Q9D6R2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Mus musculus

 34% id,
90% cov

Q8LFC0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana

 34% id,
90% cov

More...

BZY95_RS20735 BZY95_20855 WP_086511787.1: tartrate dehydrogenase
is similar to:		 PaperBLAST

IDH1_SCHPO / O13696: Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Schizosaccharomyces pombe
idh1 / RF|NP_594397.1: isocitrate dehydrogenase (NAD+) subunit 1 Idh1; EC 1.1.1.41 from Schizosaccharomyces pombe

 31% id,
94% cov

IDH3A_BOVIN / P41563: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitrate dehydrogenase subunits 3/4; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Bos taurus

 32% id,
90% cov

IDH5_ARATH / Q945K7: Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial; IDH-V; Isocitric dehydrogenase 5; NAD(+)-specific ICDH 5; EC 1.1.1.41 from Arabidopsis thaliana
Q945K7: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana

 33% id,
88% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

24871-25950 (frame -3) on NZ_MUMZ01000086.1 Halomonas desiderata SP1 contig_86, whole genome shotgun sequence
is similar to:		 PaperBLAST

IDH3A_CAEEL / Q93714: Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Caenorhabditis elegans
Also see hits to annotated proteins above

 34% id,
94% cov

2416-3510 (frame +1) on NZ_MUMZ01000027.1 Halomonas desiderata SP1 contig_27, whole genome shotgun sequence
is similar to:		 PaperBLAST

IDH3A_MOUSE / Q9D6R2: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Mus musculus
Q9D6R2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Mus musculus
Also see hits to annotated proteins above

 34% id,
93% cov

IDH3A_RAT / Q99NA5: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Rattus norvegicus
Q99NA5: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rattus norvegicus
Also see hits to annotated proteins above

 33% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory