Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.57' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS16165 BZY95_16250 WP_086510924.1: mannitol dehydrogenase family protein
is similar to:
PaperBLAST

UxuB / b4323: D-mannonate oxidoreductase (EC 1.1.1.57) from Escherichia coli
uxuB / P39160: D-mannonate oxidoreductase (EC 1.1.1.57) from Escherichia coli

47% id,
95% cov

UXUB_THEMA / Q9WXS3: D-mannonate oxidoreductase; Fructuronate reductase; Mannonate dehydrogenase; EC 1.1.1.57 from Thermotoga maritima
uxuB / Q9WXS3: D-mannonate dehydrogenase (EC 1.1.1.57) from Thermotoga maritima

27% id,
80% cov

BZY95_RS17225 BZY95_17325 WP_086511126.1: mannitol dehydrogenase family protein
is similar to:
PaperBLAST

UxuB / b4323: D-mannonate oxidoreductase (EC 1.1.1.57) from Escherichia coli
uxuB / P39160: D-mannonate oxidoreductase (EC 1.1.1.57) from Escherichia coli

42% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory