Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 60 curated entries in PaperBLAST's database that match '1.1.1.85' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS20735 BZY95_20855 WP_086511787.1: tartrate dehydrogenase
is similar to:
PaperBLAST

YeaU / b1800: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli
dmlA / P76251: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli

68% id,
99% cov

P94929: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Mycobacterium tuberculosis

44% id,
97% cov

LEU3_MYCTU / P9WKK9: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Mycobacterium tuberculosis

44% id,
97% cov

More...

leuB BZY95_RS04410 BZY95_04425 WP_086508767.1: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

LEU3_ACIFR / Q56268: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Acidithiobacillus ferrooxidans
Q56268: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Acidithiobacillus ferrooxidans

66% id,
99% cov

Q00412: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Arthrospira platensis

61% id,
99% cov

P24404: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Agrobacterium tumefaciens

59% id,
99% cov

More...

BZY95_RS12740 BZY95_12780 WP_086510301.1: tartrate dehydrogenase
is similar to:
PaperBLAST

YeaU / b1800: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli
dmlA / P76251: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli

52% id,
100% cov

P94929: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Mycobacterium tuberculosis

43% id,
98% cov

LEU3_MYCTU / P9WKK9: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Mycobacterium tuberculosis

43% id,
98% cov

More...

BZY95_RS13880 BZY95_13955 WP_086510509.1: isocitrate/isopropylmalate family dehydrogenase
is similar to:
PaperBLAST

P94929: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Mycobacterium tuberculosis

36% id,
100% cov

LEU3_METJA / Q58130: 3-isopropylmalate/3-methylmalate dehydrogenase; 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; IPMDH; Beta-IPM dehydrogenase; D-malate dehydrogenase [decarboxylating]; EC 1.1.1.85; EC 1.1.1.n5; EC 1.1.1.83 from Methanocaldococcus jannaschii
MJ0720 / Q58130: 3-isopropylmalate dehydrogenase subunit (EC 1.1.1.85) from Methanocaldococcus jannaschii

37% id,
98% cov

LEU3_MYCTU / P9WKK9: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Mycobacterium tuberculosis

36% id,
100% cov

More...

icd BZY95_RS15605 BZY95_15680 WP_010627814.1: NADP-dependent isocitrate dehydrogenase
is similar to:
PaperBLAST

LEU3_METJA / Q58130: 3-isopropylmalate/3-methylmalate dehydrogenase; 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; IPMDH; Beta-IPM dehydrogenase; D-malate dehydrogenase [decarboxylating]; EC 1.1.1.85; EC 1.1.1.n5; EC 1.1.1.83 from Methanocaldococcus jannaschii
MJ0720 / Q58130: 3-isopropylmalate dehydrogenase subunit (EC 1.1.1.85) from Methanocaldococcus jannaschii

34% id,
93% cov

LEU3_ACIFR / Q56268: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Acidithiobacillus ferrooxidans
Q56268: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Acidithiobacillus ferrooxidans

29% id,
92% cov

YeaU / b1800: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli
dmlA / P76251: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli

28% id,
93% cov

More...

BZY95_RS22785 WP_234278113.1: isocitrate/isopropylmalate family dehydrogenase
is similar to:
PaperBLAST

YeaU / b1800: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli
dmlA / P76251: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli

39% id,
21% cov

BZY95_RS22780 WP_254914227.1: isocitrate/isopropylmalate family dehydrogenase
is similar to:
PaperBLAST

YeaU / b1800: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli
dmlA / P76251: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli

44% id,
15% cov

P94929: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Mycobacterium tuberculosis

39% id,
16% cov

LEU3_MYCTU / P9WKK9: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Mycobacterium tuberculosis

39% id,
16% cov

More...

BZY95_RS22790 WP_234251355.1: hypothetical protein
is similar to:
PaperBLAST

P24098: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Thermus aquaticus

60% id,
9% cov

P61494: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Thermus thermophilus

60% id,
9% cov

P61495: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Thermus thermophilus

60% id,
9% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory