Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 22 curated entries in PaperBLAST's database that match '1.13.11.1' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS21655 BZY95_21770 WP_086511962.1: catechol 1,2-dioxygenase
is similar to:		 PaperBLAST

CATA_ACIAD / P07773: Catechol 1,2-dioxygenase; 1,2-CTD; EC 1.13.11.1 from Acinetobacter baylyi
P07773: catechol 1,2-dioxygenase (EC 1.13.11.1) from Acinetobacter baylyi

 60% id,
74% cov

salD / Q0VH42: 4-methylcatechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei
Q0VH42: catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei

 58% id,
75% cov

PfGW456L13_3822: Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas fluorescens

 58% id,
75% cov

More...

BZY95_RS08310 BZY95_08340 WP_086509475.1: dioxygenase
is similar to:		 PaperBLAST

HQD2_CANAL / P86029: Catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans
orf19.4567: catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans

 37% id,
91% cov

Q8GAY6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.

 31% id,
97% cov

catA2: catechol 1,2-dioxygenase 2; EC 1.13.11.1 from Acinetobacter lwoffii

 33% id,
89% cov

More...

pcaH BZY95_RS03540 BZY95_03555 WP_086508606.1: protocatechuate 3,4-dioxygenase subunit beta
is similar to:		 PaperBLAST

Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus

 31% id,
60% cov

catA2: catechol 1,2-dioxygenase 2; EC 1.13.11.1 from Acinetobacter lwoffii

 30% id,
56% cov

Q8GAZ6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.

 32% id,
52% cov

More...

BZY95_RS20335 BZY95_20455 WP_306766583.1: dioxygenase
is similar to:		 PaperBLAST

CATA_ACIAD / P07773: Catechol 1,2-dioxygenase; 1,2-CTD; EC 1.13.11.1 from Acinetobacter baylyi
P07773: catechol 1,2-dioxygenase (EC 1.13.11.1) from Acinetobacter baylyi

 62% id,
27% cov

Q8GAY6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.

 54% id,
27% cov

catA1: catechol 1,2-dioxygenase 1; EC 1.13.11.1 from Acinetobacter lwoffii

 54% id,
27% cov

More...

BZY95_RS03315 BZY95_03325 WP_306766555.1: dioxygenase
is similar to:		 PaperBLAST

CATA_ACIAD / P07773: Catechol 1,2-dioxygenase; 1,2-CTD; EC 1.13.11.1 from Acinetobacter baylyi
P07773: catechol 1,2-dioxygenase (EC 1.13.11.1) from Acinetobacter baylyi

 61% id,
27% cov

salD / Q0VH42: 4-methylcatechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei
Q0VH42: catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei

 55% id,
27% cov

catA1: catechol 1,2-dioxygenase 1; EC 1.13.11.1 from Acinetobacter lwoffii

 54% id,
27% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory